JumpingKnowledge

class dgl.nn.pytorch.utils.JumpingKnowledge(mode='cat', in_feats=None, num_layers=None)

Bases: Module

The Jumping Knowledge aggregation module from Representation Learning on Graphs with Jumping Knowledge Networks

It aggregates the output representations of multiple GNN layers with

concatenation

$$h_i^{(1)}\Vert \dots \Vert h_i^{(T)}$$

or max pooling

$$max(h_i^{(1)},\dots ,h_i^{(T)})$$

or LSTM

$$\sum _{t=1}^T{\alpha }_i^{(t)}{h}_i^{(t)}$$

with attention scores ${\alpha }_i^{(t)}$ obtained from a BiLSTM

Parameters:

• mode (str) – The aggregation to apply. It can be ‘cat’, ‘max’, or ‘lstm’, corresponding to the equations above in order.

• in_feats (int, optional) – This argument is only required if mode is 'lstm'. The output representation size of a single GNN layer. Note that all GNN layers need to have the same output representation size.

• num_layers (int, optional) – This argument is only required if mode is 'lstm'. The number of GNN layers for output aggregation.

Examples

>>> import dgl
>>> import torch as th
>>> from dgl.nn import JumpingKnowledge

>>> # Output representations of two GNN layers
>>> num_nodes = 3
>>> in_feats = 4
>>> feat_list = [th.zeros(num_nodes, in_feats), th.ones(num_nodes, in_feats)]

>>> # Case1
>>> model = JumpingKnowledge()
>>> model(feat_list).shape
torch.Size([3, 8])

>>> # Case2
>>> model = JumpingKnowledge(mode='max')
>>> model(feat_list).shape
torch.Size([3, 4])

>>> # Case3
>>> model = JumpingKnowledge(mode='max', in_feats=in_feats, num_layers=len(feat_list))
>>> model(feat_list).shape
torch.Size([3, 4])

forward(feat_list)

Description

Aggregate output representations across multiple GNN layers.

param feat_list:

feat_list[i] is the output representations of a GNN layer.

type feat_list:

list[Tensor]

returns:

The aggregated representations.

rtype:

Tensor

reset_parameters()

Description

Reinitialize learnable parameters. This comes into effect only for the lstm mode.